How to use TDbasedUFEadv (original) (raw)

Contents

• 1 Installation
• 2 Integrated analyses of two omics profiles
  • 2.1 When features are shared.
    * 2.1.1 Reduction of required memory using partial summation.
  • 2.2 When samples are shared
    * 2.2.1 Reduction of required memory using partial summation.
• 3 Integrated analysis of multiple omics data
  • 3.1 When samples are shared
  • 3.2 When features are shared

library(TDbasedUFEadv)
library(Biobase)
#> Loading required package: BiocGenerics
#> Loading required package: generics
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#> Attaching package: 'generics'
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#> Attaching package: 'BiocGenerics'
#> The following objects are masked from 'package:stats':
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#> The following objects are masked from 'package:base':
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#>     Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
#>     as.data.frame, basename, cbind, colnames, dirname, do.call,
#>     duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
#>     mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
#>     rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
#>     unsplit, which.max, which.min
#> Welcome to Bioconductor
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#>     Vignettes contain introductory material; view with
#>     'browseVignettes()'. To cite Bioconductor, see
#>     'citation("Biobase")', and for packages 'citation("pkgname")'.
library(RTCGA.rnaseq)
library(TDbasedUFE)
library(MOFAdata)
library(TDbasedUFE)
library(RTCGA.clinical)

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("TDbasedUFEadv")

Integrated analyses of two omics profiles

Here is a flowchart how we can make use of individual functions inTDbasedUFE and TDbasedUFEadv.

Relationship among functions in TDbasedUFE and TDbasedUFEadv

Integrated analysis of multiple omics data

Here is a flowchart how we can make use of individual functions in TDbasedUFE and TDbasedUFEadv.

Relationship among functions in TDbasedUFE and TDbasedUFEadv