R: EBAM specific print method (original) (raw)
| print {siggenes} | R Documentation |
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Description
Prints the numbers of differentially expressed genes and the estimated FDRs for a set of values of delta when performing an Empirical Bayes Analysis of Microarrays.
Usage
print(x, delta = NULL, n.digits = 4)
Arguments
| x | an EBAM object |
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| delta | a numeric value or vector between 0 and 1 specifying the minimum posterior probabilities for a gene to be called differentially expressed. If NULL, the values of deltaare used that have been specified when generating the EBAM object specified by x |
| n.digits | an integer specifying the number of decimal places in the output |
Author(s)
Holger Schwender, holger.schw@gmx.de
References
Efron, B., Tibshirani, R., Storey, J.D. and Tusher, V. (2001). Empirical Bayes Analysis of a Microarray Experiment, JASA, 96, 1151-1160.
Schwender, H., Krause, A. and Ickstadt, K. (2003). Comparison of the Empirical Bayes and the Significance Analysis of Microarrays.Technical Report, SFB 475, University of Dortmund, Germany.