IONiseR (original) (raw)

This is the released version of IONiseR; for the devel version, seeIONiseR.

Quality Assessment Tools for Oxford Nanopore MinION data

Bioconductor version: Release (3.20)

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith

Citation (from within R, enter citation("IONiseR")):

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IONiseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IONiseR")

Details

See More

Package Archives

Follow Installation instructions to use this package in your R session.