ipdDb (original) (raw)
This is the released version of ipdDb; for the devel version, seeipdDb.
IPD IMGT/HLA and IPD KIR database for Homo sapiens
Bioconductor version: Release (3.21)
All alleles from the IPD IMGT/HLA and IPD KIR database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.
Author: Steffen Klasberg
Maintainer: Steffen Klasberg
Citation (from within R, enter citation("ipdDb")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ipdDb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ipdDb")
Details
biocViews | AnnotationHubSoftware, DataRepresentation, GenomicVariation, SequenceMatching, Software, VariantAnnotation |
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Version | 1.26.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (6.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), methods, AnnotationDbi(>= 1.43.1), AnnotationHub |
Imports | Biostrings, GenomicRanges, RSQLite, DBI, IRanges, stats, assertthat |
System Requirements | |
URL | https://github.com/DKMS-LSL/ipdDb |
Bug Reports | https://github.com/DKMS-LSL/ipdDb/issues/new |
See More
Suggests | knitr, rmarkdown, testthat |
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Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ipdDb_1.26.0.tar.gz |
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Windows Binary (x86_64) | ipdDb_1.26.0.zip |
macOS Binary (x86_64) | ipdDb_1.26.0.tgz |
macOS Binary (arm64) | ipdDb_1.26.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ipdDb |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ipdDb |
Bioc Package Browser | https://code.bioconductor.org/browse/ipdDb/ |
Package Short Url | https://bioconductor.org/packages/ipdDb/ |
Package Downloads Report | Download Stats |