CrossExpression: Cross-Expression Analysis of Spatial Transcriptomics Data (original) (raw)
Analyzes spatial transcriptomic data using cells-by-genes and cell location matrices to find gene pairs that coordinate their expression between spatially adjacent cells. It enables quantitative analysis and graphical assessment of these cross-expression patterns. See Sarwar et al. (2025) <doi:10.1101/2024.09.17.613579> and <https://github.com/gillislab/CrossExpression/> for more details.
| Version: | 1.0.0 |
|---|---|
| Depends: | R (≥ 3.5.0) |
| Imports: | Rfast, RANN, Matrix, ggplot2, dplyr, stats, stringr |
| Published: | 2025-07-28 |
| DOI: | 10.32614/CRAN.package.CrossExpression |
| Author: | Ameer Sarwar [aut, cre], Sarah Choi [ctb], Leon French [ctb], Jesse Gillis [aut] |
| Maintainer: | Ameer Sarwar <dogar.ameer at gmail.com> |
| License: | MIT + file |
| NeedsCompilation: | no |
| CRAN checks: | CrossExpression results |
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