doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.">

HTRX: Haplotype Trend Regression with eXtra Flexibility (HTRX) (original) (raw)

Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.

Version: 1.2.4
Depends: R (≥ 4.0.0)
Imports: fastglm, caret, parallel, methods, stats, glmnet, tune, recipes
Suggests: knitr, rmarkdown
Published: 2024-02-09
DOI: 10.32614/CRAN.package.HTRX
Author: Yaoling Yang ORCID iD [aut, cre], Daniel Lawson ORCID iD [aut]
Maintainer: Yaoling Yang <yaoling.yang at bristol.ac.uk>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: HTRX results

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