MetaComp: EDGE Taxonomy Assignments Visualization (original) (raw)
Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.
| Version: | 1.1.2 |
|---|---|
| Depends: | R (≥ 3.1.0) |
| Imports: | reshape2, plyr, dplyr, data.table, ggplot2, Cairo |
| Suggests: | testthat |
| Published: | 2018-06-18 |
| DOI: | 10.32614/CRAN.package.MetaComp |
| Author: | Pavel Senin [aut, cre] |
| Maintainer: | Pavel Senin |
| BugReports: | https://github.com/seninp-bioinfo/MetaComp/issues |
| License: | GPL-2 |
| URL: | https://github.com/seninp-bioinfo/MetaComp |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | MetaComp results |
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