PCMBaseCpp: Fast Likelihood Calculation for Phylogenetic Comparative Models (original) (raw)
Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2020) <doi:10.1016/j.tpb.2019.11.005>. Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) <doi:10.1111/2041-210X.13136>.
| Version: | 0.1.11 |
|---|---|
| Depends: | R (≥ 3.1.0), Rcpp, methods |
| Imports: | PCMBase, data.table, abind |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | testthat, knitr, rmarkdown, covr |
| Published: | 2025-05-04 |
| DOI: | 10.32614/CRAN.package.PCMBaseCpp |
| Author: | Venelin Mitov [aut, cre, cph] (venelin.github.io) |
| Maintainer: | Venelin Mitov |
| BugReports: | https://github.com/venelin/PCMBaseCpp/issues |
| License: | GPL (≥ 3.0) |
| URL: | https://github.com/venelin/PCMBaseCpp, https://venelin.github.io |
| NeedsCompilation: | yes |
| Citation: | PCMBaseCpp citation info |
| Materials: | README, NEWS |
| CRAN checks: | PCMBaseCpp results |
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