RNAseqQC: Quality Control for RNA-Seq Data (original) (raw)

Functions for semi-automated quality control of bulk RNA-seq data.

Version:

0.2.1

Depends:

R (≥ 4.0)

Imports:

AnnotationHub, AnnotationFilter, BiocGenerics, ensembldb, circlize, DESeq2, SummarizedExperiment, ComplexHeatmap, matrixStats, grid, ggpointdensity, ggrepel, ggplot2, cowplot, patchwork, purrr, dplyr, stringr, tidyr, tibble, tidyselect, magrittr

Suggests:

rmarkdown, knitr, recount3, apeglm, ggrastr, gghighlight

Published:

2024-07-15

DOI:

10.32614/CRAN.package.RNAseqQC

Author:

Frederik Ziebell [cre], Frederik Ziebell ORCID iD [aut], GlaxoSmithKline Research & Development Limited [cph] (GlaxoSmithKline Research & Development Limited; registered address: 980 Great West Road, Brentford, Middlesex TW8 9GS, United Kingdom)

Maintainer:

Frederik Ziebell <f_ziebell at web.de>

BugReports:

https://github.com/frederikziebell/RNAseqQC/issues

License:

Apache License (≥ 2)

URL:

https://github.com/frederikziebell/RNAseqQC

NeedsCompilation:

no

Materials:

README, NEWS

CRAN checks:

RNAseqQC results