RTIGER: HMM-Based Model for Genotyping and Cross-Over Identification (original) (raw)
Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors <doi:10.1093/plphys/kiad191>.
Version:
2.1.0
Depends:
R (≥ 3.6), GenomicRanges, GenomeInfoDb
Imports:
methods, e1071, extraDistr, reshape2, ggplot2, TailRank, JuliaCall, IRanges, qpdf, grDevices, graphics, stats, utils
Suggests:
knitr, rmarkdown, markdown, Gviz, rtracklayer
Published:
2023-03-29
DOI:
Author:
Rafael Campos-Martin
[cre], Sophia Schmickler [aut], Manish Goel [ctb], Korbinian Schneeberger [aut], Achim Tresch [aut]
Maintainer:
Rafael Campos-Martin <rfael.mpi at gmail.com>
License:
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:
no
Materials:
CRAN checks: