SCORPIUS: Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data (original) (raw)
An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, 'SCORPIUS' provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.
| Version: | 1.0.9 |
|---|---|
| Depends: | R (≥ 3.5.0) |
| Imports: | dplyr, dynutils (≥ 1.0.3), dynwrap, grDevices, ggplot2 (≥ 2.0), lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap, princurve (≥ 2.1.4), purrr, ranger, RANN, RColorBrewer, reshape2, stats, tidyr, TSP |
| Suggests: | anndata, covr, knitr, reticulate, rmarkdown, Seurat, SingleCellExperiment, testthat (≥ 2.1.0) |
| Published: | 2023-08-07 |
| DOI: | 10.32614/CRAN.package.SCORPIUS |
| Author: | Robrecht Cannoodt  [aut, cre] (github: rcannood), Wouter Saelens [ctb] (github: zouter) |
| Maintainer: | Robrecht Cannoodt |
| BugReports: | https://github.com/rcannood/SCORPIUS/issues |
| License: | GPL-3 |
| URL: | https://github.com/rcannood/SCORPIUS,http://rcannood.github.io/SCORPIUS/ |
| NeedsCompilation: | no |
| Citation: | SCORPIUS citation info |
| Materials: | README, NEWS |
| In views: | Omics |
| CRAN checks: | SCORPIUS results |
Documentation:
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