SIPmg: Statistical Analysis to Identify Isotope Incorporating MAGs (original) (raw)
Statistical analysis as part of a stable isotope probing (SIP) metagenomics study to identify isotope incorporating taxa recovered as metagenome-assembled genomes (MAGs). Helpful reading and a vignette in bookdown format is provided on the package site <https://zielslab.github.io/SIPmg.github.io/>.
Version:
1.4.1
Depends:
R (≥ 3.5.0)
Imports:
HTSSIP, dplyr, lazyeval, phyloseq, plyr, stringr, tibble, tidyr, magrittr, ggplot2, ggpubr, purrr, rlang, MASS, DESeq2, data.table, utils
Suggests:
rmarkdown, knitr, EBImage, readr, BiocManager
Published:
2023-02-22
DOI:
Author:
Pranav Sampara [aut, cre], Kate Waring [ctb], Ryan Ziels [aut]
Maintainer:
Pranav Sampara <pranav.sai.4 at gmail.com>
BugReports:
https://github.com/ZielsLab/SIPmg
License:
URL:
https://zielslab.github.io/SIPmg.github.io/
NeedsCompilation:
yes
CRAN checks: