TcGSA: Time-Course Gene Set Analysis (original) (raw)
Implementation of Time-course Gene Set Analysis (TcGSA), a method for analyzing longitudinal gene-expression data at the gene set level. Method is detailed in: Hejblum, Skinner & Thiebaut (2015) <doi:10.1371/journal.pcbi.1004310>.
Version:
0.12.10
Depends:
R (≥ 3.0.2), ggplot2 (≥ 2.0.0)
Imports:
lme4 (≥ 1.0-4), reshape2, GSA, multtest, cluster, cowplot, graphics, grDevices, gtools, stringr, splines, stats, utils
Suggests:
BiocManager, foreach, parallel, doParallel, dearseq, knitr, GEOquery, rmarkdown
Published:
2022-02-28
DOI:
Author:
Boris P Hejblum [aut, cre], Damien Chimits [aut], Anthony Devaux [aut]
Maintainer:
Boris P Hejblum <boris.hejblum at u-bordeaux.fr>
BugReports:
https://github.com/sistm/TcGSA/issues
License:
GPL-2 | file
URL:
NeedsCompilation:
no
Citation:
Materials:
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