ace2fastq: ACE File to FASTQ Converter (original) (raw)
The ACE file format is used in genomics to store contigs from sequencing machines. This tools converts it into FASTQ format. Both formats contain the sequence characters and their corresponding quality information. Unlike the FASTQ file, the ace file stores the quality values numerically. The conversion algorithm uses the standard Sanger formula. The package facilitates insertion into pipelines, and content inspection.
| Version: | 0.6.0 |
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| Imports: | stringr |
| Suggests: | testthat, knitr, rmarkdown, covr |
| Published: | 2019-06-20 |
| DOI: | 10.32614/CRAN.package.ace2fastq |
| Author: | Reinhard Simon  [aut, cre] |
| Maintainer: | Reinhard Simon |
| BugReports: | https://github.com/c5sire/ace2fastq/issues |
| License: | GPL-3 |
| URL: | https://github.com/c5sire/ace2fastq |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | ace2fastq results |
Documentation:
| Reference manual: | ace2fastq.html , <ace2fastq.pdf> |
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| Vignettes: | Tutorial (source, R code) |
Downloads:
| Package source: | ace2fastq_0.6.0.tar.gz |
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| Windows binaries: | r-devel: ace2fastq_0.6.0.zip, r-release: ace2fastq_0.6.0.zip, r-oldrel: ace2fastq_0.6.0.zip |
| macOS binaries: | r-release (arm64): ace2fastq_0.6.0.tgz, r-oldrel (arm64): ace2fastq_0.6.0.tgz, r-release (x86_64): ace2fastq_0.6.0.tgz, r-oldrel (x86_64): ace2fastq_0.6.0.tgz |
| Old sources: | ace2fastq archive |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=ace2fastqto link to this page.