NEWS (original) (raw)
Versioning
Releases will be numbered with the following semantic versioning format:
..
And constructed with the following guidelines:
- Breaking backward compatibility bumps the major (and resets the minor and patch)
- New additions without breaking backward compatibility bumps the minor (and resets the patch)
- Bug fixes and misc changes bumps the patch
- Bug fixed of
cdm.fig
andcdm.miss
- Revamped
tbl
to include Cox proportional hazards model - Added
comparerel
to compare reliability estimates - Minor Bug fixes
- Updated
calcrel
to useconfint
for SRD instead ofconfint.default
- Added paired
t.test
tocalcrel
for internal consistency. - Revamped
tbl
to include both summary statistics and statistical analyses. - Added
cdm.miss
andcdm.fig
- Added
questionaire
- Added
calcrel
to calculate reliability estimates. - Updated
PLR3000
to accept recordings without marking. - Added the a
dynamic_artefacts
setting to thedilations
function and documentation. Used to dynamically assess artefacts. Also renamedartefacts
tostatic_artefacts
. - Added the a
resting_delay
setting to thedilations
function and documentation. Used to assess delay the subsequent period for assessment. - Added the
dilations
function and documentation. Used to assess dilations fromPLR3000
. - Updated
sRCT
function and documentation. Now applies random effect of site, and add relative risks together using ln-number instead of absolute numbers - Updated
clinmon
documentation - Optimised
rrGcomp
- Updated
clinmon
documentation - Minor bugfixing for
PLR3000
- Added the
sRCT
-function to generate simulated randomized clinical trials. Much more work to add - Added the
rrGcomp
-function to calculate relative risk using G-computation from an individual participant dataframe. - Added the
PLR3000
-function to convert data extracted from NeurOptics PLR-3000 to a long format dataframe. - Added the
iscus
-function to convert XML microdialysis data to a dataframe. - Small bugfixes for the
TFA
andclinmon
functions, especially the overlapping functionality did not produce Mx, PRx or CPPopt. - Updated descriptions and helper-files.
- Changed name from clinmon to clintools to allow for inclusion of other function than only hemodynamic indices.
- Based on the matlab-script created by David Simpsons in 2015 the
TFA
-function have been added to calculate the transfer function analysis. - The test data from 2015 has also been addedd
data(tfa_sample_data)
,data(tfa_sample_data1)
, anddata(tfa_sample_data2)
to underline the script generates the same results as the Matlab-script. - Added the
ortable
-function which generates an Odds ratio table from a logistic regressionglm
. - Simplified the package, to calculate all the indices in
clinmon()
.clinmon()
uses a_continuous_ recording and returns a dataframe with hemodynamic indices for every period, epoch or block depending on the chosen output. IncludesCOest
,CPPopt
,CVRi
,Dx
,Mx
,PI
,PRx
,PWA
,RI
, andSx
(see details). - Test data set is added to the package in two resolutions 1000 Hz, and 10 Hz. The corresponding deleter-file is also added.
- Corrected the error, that missing values from artefacts deletion in blocks and epochs results in a errorgenous correlation coefficient.
- This is the first version of the package put on CRAN
- Correlation coefficient based indices
Dx
,Sx
,Mx
andPRx
are functional, and validated through ICM+ - Furthermore indices such as
CVRi
,PI
,RI
,PWA
, andCO
are functional. CPPopt
andTFA
will be added in future versions