coda4microbiome: Compositional Data Analysis for Microbiome Studies (original) (raw)

Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.

Version: 0.2.4
Depends: R (≥ 3.5.0)
Imports: corrplot, glmnet, plyr, pROC, ggpubr, ggplot2, ComplexHeatmap, circlize, survival, survminer
Suggests: rmarkdown
Published: 2024-07-17
DOI: 10.32614/CRAN.package.coda4microbiome
Author: Malu Calle ORCID iD [aut], Toni Susin ORCID iD [aut, cre], Meritxell PujolassosORCID iD [aut]
Maintainer: Toni Susin <toni.susin at upc.edu>
BugReports: https://github.com/malucalle/coda4microbiome/issues
License: MIT + file
URL: https://malucalle.github.io/coda4microbiome/
NeedsCompilation: no
In views: CompositionalData
CRAN checks: coda4microbiome results

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