do3PCA: Probabilistic Phylogenetic Principal Component Analysis (original) (raw)

Estimates probabilistic phylogenetic Principal Component Analysis (PCA) and non-phylogenetic probabilistic PCA. Provides methods to implement alternative models of trait evolution including Brownian motion (BM), Ornstein-Uhlenbeck (OU), Early Burst (EB), and Pagel's lambda. Also provides flexible biplot functions.

Version: 1.0.0
Depends: R (≥ 3.5.0), Rdimtools
Imports: ape, phytools, matrixcalc, mclust, nloptr, ratematrix, stats, utils
Published: 2024-09-24
DOI: 10.32614/CRAN.package.do3PCA
Author: Daniel Caetano ORCID iD [aut, cre]
Maintainer: Daniel Caetano
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)]
NeedsCompilation: no
In views: Phylogenetics
CRAN checks: do3PCA results

Documentation:

Downloads:

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=do3PCAto link to this page.