gapmap: Drawing Gapped Cluster Heatmaps with 'ggplot2' (original) (raw)
The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.
| Version: | 1.0.0 |
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| Depends: | ggplot2, reshape2 |
| Imports: | grid |
| Suggests: | knitr, dendsort, RColorBrewer, rmarkdown |
| Published: | 2024-01-22 |
| DOI: | 10.32614/CRAN.package.gapmap |
| Author: | Ryo Sakai [aut], Evan Biederstedt [cre, aut] |
| Maintainer: | Evan Biederstedt <evan.biederstedt at gmail.com> |
| BugReports: | https://github.com/evanbiederstedt/gapmap/issues |
| License: | GPL-2 | GPL-3 |
| URL: | https://github.com/evanbiederstedt/gapmap |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | gapmap results |
Documentation:
| Reference manual: | gapmap.pdf |
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| Vignettes: | "An introduction to the gapmap package" "Example with a TCGA dataset" |
Downloads:
| Package source: | gapmap_1.0.0.tar.gz |
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| Windows binaries: | r-devel: gapmap_1.0.0.zip, r-release: gapmap_1.0.0.zip, r-oldrel: gapmap_1.0.0.zip |
| macOS binaries: | r-release (arm64): gapmap_1.0.0.tgz, r-oldrel (arm64): gapmap_1.0.0.tgz, r-release (x86_64): gapmap_1.0.0.tgz, r-oldrel (x86_64): gapmap_1.0.0.tgz |
| Old sources: | gapmap archive |
Reverse dependencies:
| Reverse suggests: | dendsort |
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Linking:
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