https://github.com/ejade42/ggDNAvis>, a full non-expert user guide is available at <https://ejade42.github.io/ggDNAvis/>, and an interactive web-app version of the software is available at <https://ejade42.github.io/ggDNAvis/articles/interactive_app.html>.">

ggDNAvis: 'ggplot2'-Based Tools for Visualising DNA Sequences and Modifications (original) (raw)

Uses 'ggplot2' to visualise either (a) a single DNA/RNA sequence split across multiple lines, (b) multiple DNA/RNA sequences, each occupying a whole line, or (c) base modifications such as DNA methylation called by modified bases models in Dorado or Guppy. Functions starting with visualise_<>() are the main plotting functions, and functions starting with extract_and_sort_<>() are key helper functions for reading files and reformatting data. Source code is available at <https://github.com/ejade42/ggDNAvis>, a full non-expert user guide is available at <https://ejade42.github.io/ggDNAvis/>, and an interactive web-app version of the software is available at <https://ejade42.github.io/ggDNAvis/articles/interactive_app.html>.

Version: 1.0.0
Depends: R (≥ 3.5)
Imports: cli, dplyr, ggnewscale, ggplot2 (≥ 4.0.0), grid, magick, png, ragg, rlang, stats, stringr, tidyr, utils
Suggests: bslib, colourpicker, jsonlite, knitr, markdown, rmarkdown, shiny, shinyjs, testthat (≥ 3.0.0)
Published: 2026-03-06
DOI: 10.32614/CRAN.package.ggDNAvis
Author: Evelyn Jade ORCID iD [aut, cre, cph]
Maintainer: Evelyn Jade
BugReports: https://github.com/ejade42/ggDNAvis/issues
License: MIT + file
URL: https://ejade42.github.io/ggDNAvis/,https://github.com/ejade42/ggDNAvis,https://doi.org/10.64898/2026.03.02.708895
NeedsCompilation: no
Language: en-GB
Citation: ggDNAvis citation info
Materials: NEWS
CRAN checks: ggDNAvis results

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