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goat: Gene Set Analysis Using the Gene Set Ordinal Association Test (original) (raw)

Perform gene set enrichment analyses using the Gene set Ordinal Association Test (GOAT) algorithm and visualize your results. Koopmans, F. (2024) <doi:10.1038/s42003-024-06454-5>.

Version: 1.1.3
Depends: R (≥ 4.1.0), dplyr (≥ 1.0.3)
Imports: tibble (≥ 3.0.0), tidyselect (≥ 1.2.0), tidyr (≥ 1.1.2), data.table (≥ 1.14.0), Matrix (≥ 1.4-0), readxl (≥ 1.4.1), writexl (≥ 1.4.1), Rcpp (≥ 1.0.9), vctrs (≥ 0.3.8), MonoPoly (≥ 0.3-10), ggplot2 (≥ 3.3.0), pheatmap (≥ 1.0.8), treemap (≥ 2.4), igraph (≥ 1.2.5), ggraph (≥ 2.0.0)
LinkingTo: Rcpp
Suggests: AnnotationDbi, GO.db, org.Hs.eg.db, org.Pt.eg.db, org.Mmu.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Dr.eg.db, org.Dm.eg.db, org.Ce.eg.db, fgsea, testthat (≥ 3.0.0)
Published: 2025-08-27
DOI: 10.32614/CRAN.package.goat
Author: Frank Koopmans ORCID iD [aut, cre]
Maintainer: Frank Koopmans
License: Apache License (≥ 2)
URL: https://github.com/ftwkoopmans/goat/
NeedsCompilation: yes
Language: en-US
Citation: goat citation info
Materials: README, NEWS
CRAN checks: goat results

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