inDAGO: A GUI for Dual and Bulk RNA-Sequencing Analysis (original) (raw)
A 'shiny' app that supports both dual and bulk RNA-seq, with the dual RNA-seq functionality offering the flexibility to perform either a sequential approach (where reads are mapped separately to each genome) or a combined approach (where reads are aligned to a single merged genome). The user-friendly interface automates the analysis process, providing step-by-step guidance, making it easy for users to navigate between different analysis steps, and download intermediate results and publication-ready plots.
| Version: | 1.0.2 |
|---|---|
| Imports: | bigtabulate, bsicons, bslib, callr, checkmate, data.table, dplyr, DT, fs, ggplot2, ggrepel, grDevices, heatmaply, Hmisc, htmltools, magrittr, matrixStats, memuse, methods, paletteer, parallel, pheatmap, plotly, R.devices, readr, reshape2, rintrojs, seqinr, shiny, shinycssloaders, shinyFiles, shinyjs, shinyWidgets, spsComps, stats, tibble, tidyr, tools, upsetjs, UpSetR, utils |
| Suggests: | BiocGenerics, BiocManager, Biostrings, edgeR, harrypotter, HTSFilter, limma, oompaBase, palr, Rfastp, Rsamtools, Rsubread, rtracklayer, S4Vectors, ShortRead, testthat (≥ 3.0.0), XVector |
| Published: | 2025-09-19 |
| DOI: | 10.32614/CRAN.package.inDAGO |
| Author: | Carmine Fruggiero [aut, cre], Gaetano Aufiero [aut] |
| Maintainer: | Carmine Fruggiero |
| BugReports: | https://github.com/inDAGOverse/inDAGO/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/inDAGOverse/inDAGO |
| NeedsCompilation: | no |
| CRAN checks: | inDAGO results [issues need fixing before 2025-10-20] |
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