pez: Phylogenetics for the Environmental Sciences (original) (raw)
Eco-phylogenetic and community phylogenetic analyses. Keeps community ecological and phylogenetic data matched up and comparable using 'comparative.comm' objects. Wrappers for common community phylogenetic indices ('pez.shape', 'pez.evenness', 'pez.dispersion', and 'pez.dissimilarity' metrics). Implementation of Cavender-Bares (2004) correlation of phylogenetic and ecological matrices ('fingerprint.regression'). Phylogenetic Generalised Linear Mixed Models (PGLMMs; 'pglmm') following Ives & Helmus (2011) and Rafferty & Ives (2013). Simulation of null assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').
| Version: | 1.2-4 |
|---|---|
| Depends: | ape (≥ 3.1-4) |
| Imports: | caper (≥ 0.5-2), picante (≥ 1.6-2), quantreg (≥ 5.05), mvtnorm (≥ 1.0-0), vegan (≥ 2.0-10), ade4 (≥ 1.6-2), FD (≥ 1.0-12), Matrix (≥ 1.1-4), methods (≥ 3.1.0), animation (≥ 2.4-0), phytools (≥ 0.6-60) |
| Suggests: | knitr (≥ 1.6), lme4 (≥ 1.1-7), formatR (≥ 1.7) |
| Published: | 2022-08-31 |
| DOI: | 10.32614/CRAN.package.pez |
| Author: | William D. Pearse, Marc W. Cadotte, Jeannine Cavender-Bares, Anthony R. Ives, Caroline Tucker, Steve C. Walker, Matthew R. Helmus |
| Maintainer: | William D. Pearse <will.pearse at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | pez citation info |
| Materials: | |
| In views: | MixedModels |
| CRAN checks: | pez results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=pezto link to this page.