plsgenomics: PLS Analyses for Genomics (original) (raw)
Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: logit-SPLS; and an adaptive version of the sparse PLS.
| Version: | 1.5-3 |
|---|---|
| Depends: | R (≥ 3.0) |
| Imports: | MASS, boot, parallel, reshape2, plyr, fields, RhpcBLASctl |
| Published: | 2024-03-28 |
| DOI: | 10.32614/CRAN.package.plsgenomics |
| Author: | Anne-Laure Boulesteix, Ghislain Durif, Sophie Lambert-Lacroix, Julie Peyre, and Korbinian Strimmer. |
| Maintainer: | Ghislain Durif <gd.dev at libertymail.net> |
| BugReports: | https://github.com/gdurif/plsgenomics/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/gdurif/plsgenomics |
| NeedsCompilation: | no |
| Materials: | |
| CRAN checks: | plsgenomics results |
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