qtlpoly: Random-Effect Multiple QTL Mapping in Autopolyploids (original) (raw)
Performs random-effect multiple interval mapping (REMIM) in full-sib families of autopolyploid species based on restricted maximum likelihood (REML) estimation and score statistics, as described in Pereira et al. (2020) <doi:10.1534/genetics.120.303080>.
Version:
0.2.4
Depends:
R (≥ 4.0)
Imports:
ggplot2 (≥ 3.1), abind (≥ 1.4), MASS (≥ 7.3), gtools (≥ 3.9.2), CompQuadForm, Matrix, RLRsim, mvtnorm, nlme, quadprog, parallel, doParallel, foreach, stats, methods, mappoly, Rcpp (≥ 0.12.19)
LinkingTo:
Rcpp, RcppArmadillo, RcppProgress
Suggests:
Published:
2024-03-25
DOI:
Author:
Guilherme da Silva Pereira
[aut], Marcelo Mollinari [ctb], Gabriel de Siqueira Gesteira [ctb, cre], Zhao-Bang Zeng [ctb], Long Qu [ctb] (R code for variance component tests using score statistics in R/varComp.R), Giovanny Covarrubias-Pazaran [ctb] (C code for fitting mixed models with REML estimation in src/MNR.cpp)
Maintainer:
Gabriel de Siqueira Gesteira
BugReports:
https://github.com/gabrielgesteira/QTLpoly/issues
License:
URL:
https://gabrielgesteira.github.io/QTLpoly/
NeedsCompilation:
yes
Citation:
Materials:
In views:
CRAN checks: