rCNV: Detect Copy Number Variants from SNPs Data (original) (raw)

Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).

Version: 1.3.0
Depends: R (≥ 3.6.0)
Imports: data.table, graphics, colorspace, R.utils, qgraph, stringr
Suggests: rmarkdown, knitr, testthat (≥ 3.0.0), covr
Published: 2024-09-20
DOI: 10.32614/CRAN.package.rCNV
Author: Piyal KarunarathneORCID iD [aut, cre], Qiujie Zhou ORCID iD [aut], Klaus Schliep ORCID iD [aut], Pascal Milesi ORCID iD [aut]
Maintainer: Piyal Karunarathne
BugReports: https://github.com/piyalkarum/rCNV/issues
License: AGPL (≥ 3)
URL: https://piyalkarum.github.io/rCNV/,https://cran.r-project.org/package=rCNV
NeedsCompilation: no
Language: en-US
Citation: rCNV citation info
Materials: README, NEWS
CRAN checks: rCNV results

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