- All parent child cylinder IDs, nodes, and branches begin numbering at 1 to ensure compatibility with R indexing and igraph. This affects SimpleForest and Treegraph.
- Redefined SimpleForest branch structure to begin at a new branch order and end in a twig. This ensures consistency in the code and calculations between TreeQSM, Treegraph, and SimpleForest. The old branch definition is saved as a new variable called branch_alt, and is changed to begin at zero to be consistent with the new_branch_alt_ variable from Real Twig.
- Renamed twigRad function parameter to_twig_radius_ to be consistent with tidy style guidelines
- Renamed GrowthLength to growthLength to be consistent with SimpleForest
- Variable names in
qsm_summary()
updated to be explicit and consistent with the outputs oftree_metrics()
plot_qsm()
now takes input column parameters as quoted variables. cyl_color and cyl_palette have been changed to color and palette respectively.cyl_sides has been renamed to facets.
export_mesh()
now takes input column parameters as quoted variables. cyl_color and cyl_palette have been changed to color and palette respectively.cyl_sides has been renamed to facets.
plot_stand()
has been deprecated as all of its functionality is now incorporated into plot_qsm()
- twigs: renamed scientific.name to_scientific_name_ and radius.mm to _radius_mm_for consistent naming conventions across the package.