scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing (original) (raw)

Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.

Version:	3.0.1
Depends:	R (≥ 4.0.0), Seurat (≥ 4.3.0.1)
Imports:	circlize, cli (≥ 3.2.0), cowplot, data.table, dplyr, forcats, ggbeeswarm, ggplot2, ggprism, ggrastr, ggrepel, glue, grDevices, grid, janitor, lifecycle, magrittr, Matrix (≥ 1.5.0), methods, paletteer, patchwork, pbapply, purrr, rlang (≥ 1.1.3), scales, scattermore (≥ 1.2), SeuratObject (≥ 5.0.0), stats, stringi, stringr, tibble, tidyr
Suggests:	BiocFileCache, ComplexHeatmap, dittoSeq, DropletUtils, ggpubr, hdf5r, knitr, Nebulosa, remotes, reticulate, rliger, rmarkdown, scuttle, tidyselect, qs, viridis
Published:	2024-12-18
DOI:	10.32614/CRAN.package.scCustomize
Author:	Samuel Marsh [aut, cre], Ming Tang [ctb], Velina Kozareva [ctb], Lucas Graybuck [ctb]
Maintainer:	Samuel Marsh <samuel.marsh at childrens.harvard.edu>
BugReports:	https://github.com/samuel-marsh/scCustomize/issues
License:	GPL (≥ 3)
URL:	https://github.com/samuel-marsh/scCustomize,https://samuel-marsh.github.io/scCustomize/,https://doi.org/10.5281/zenodo.5706431
NeedsCompilation:	no
Materials:	README NEWS
CRAN checks:	scCustomize results

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