scPipeline: A Wrapper for 'Seurat' and Related R Packages for End-to-End Single Cell Analysis (original) (raw)
Reports markers list, differentially expressed genes, associated pathways, cell-type annotations, does batch correction and other related single cell analyses all wrapped within 'Seurat'.
| Version: | 0.2.0.0 |
|---|---|
| Imports: | Seurat, batchelor, dplyr, ReactomeGSA, celldex, SingleR, SummarizedExperiment, biomaRt, magrittr, rlang |
| Suggests: | knitr, rmarkdown |
| Published: | 2025-03-07 |
| DOI: | 10.32614/CRAN.package.scPipeline |
| Author: | Viswanadham Sridhara [aut, cre] |
| Maintainer: | Viswanadham Sridhara <Sridhara.Omics at gmail.com> |
| License: | MIT + file |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | scPipeline results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=scPipelineto link to this page.