CRAN: scoper citation info (original) (raw)

To cite the scoper package or spectral clustering-based model in publications, please use:

Nouri N, Kleinstein S (2018). “A spectral clustering-based method for identifying clones from high-throughput B cell repertoire sequencing data.”Bioinformatics, i341-i349.doi:10.1093/bioinformatics/bty235.

Nouri N, Kleinstein S (2020). “Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data.”PLOS Computational Biology, 16(6), e1007977.doi:10.1371/journal.pcbi.1007977.

To cite the hierarchical clustering-based model in publications, please use:

Gupta N, Adams K, Briggs A, Timberlake S, Vigneault F, Kleinstein S (2017). “Hierarchical clustering can identify B cell clones with high confidence in Ig repertoire sequencing data.”The Journal of Immunology, 2489-2499.doi:10.4049/jimmunol.1601850.

Corresponding BibTeX entries:

@Article{, style = {citation}, title = {A spectral clustering-based method for identifying clones from high-throughput B cell repertoire sequencing data.}, author = {Nima Nouri and Steven H. Kleinstein}, year = {2018}, journal = {Bioinformatics}, pages = {i341-i349}, doi = {10.1093/bioinformatics/bty235}, }

@Article{, style = {citation}, title = {Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data.}, author = {Nima Nouri and Steven H. Kleinstein}, year = {2020}, journal = {PLOS Computational Biology}, volume = {16}, number = {6}, pages = {e1007977}, doi = {10.1371/journal.pcbi.1007977}, }

@Article{, style = {citation}, title = {Hierarchical clustering can identify B cell clones with high confidence in Ig repertoire sequencing data.}, author = {Namita T. Gupta and Kristofor D. Adams and Adrian W. Briggs and Sonia C. Timberlake and Francois Vigneault and Steven H. Kleinstein}, year = {2017}, journal = {The Journal of Immunology}, pages = {2489-2499}, doi = {10.4049/jimmunol.1601850}, }