seriation: Infrastructure for Ordering Objects Using Seriation (original) (raw)
Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
| Version: | 1.5.7 |
|---|---|
| Depends: | R (≥ 2.14.0) |
| Imports: | ca, cluster, colorspace, foreach, gclus, grDevices, grid, MASS, qap, registry, stats, TSP, vegan |
| Suggests: | dbscan, DendSer, dendextend, doParallel, GA, ggplot2, keras, Rtsne, scales, smacof, tensorflow, testthat, umap |
| Published: | 2024-12-05 |
| DOI: | 10.32614/CRAN.package.seriation |
| Author: | Michael Hahsler  [aut, cre, cph], Christian Buchta [aut, cph], Kurt Hornik [aut, cph], David Barnett [ctb], Michael Brusco [ctb, cph], Michael Friendly [ctb], Hans-Friedrich Koehn [ctb, cph], Fionn Murtagh [ctb, cph], Stephanie Stahl [ctb, cph] |
| Maintainer: | Michael Hahsler |
| BugReports: | https://github.com/mhahsler/seriation/issues |
| License: | GPL-3 |
| Copyright: | The code in src/bbwrcg.f, src/arsa.f and src/bburcg.f are Copyright (C) 2005 M. Brusco, H.F. Koehn, and S. Stahl. All other code is Copyright (C) Michael Hahsler, Christian Buchta, and Kurt Hornik. |
| URL: | https://github.com/mhahsler/seriation |
| NeedsCompilation: | yes |
| Classification/ACM: | G.1.6, G.2.1, G.4 |
| Citation: | seriation citation info |
| Materials: | README NEWS |
| In views: | Cluster |
| CRAN checks: | seriation results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: | adepro, ClusteredMutations, DendSer, elaborator, NetSAM |
|---|---|
| Reverse imports: | arulesViz, baizer, corrr, HarmonizR, heatmaply, MEDseq, methylscaper, qlcVisualize, RMaCzek, sechm, treeheatr |
| Reverse suggests: | ChemoSpec, corrgram, corrplot, dendextend, dendsort, disclapmix, flexclust, ggraph, ockc, protti, SFS, tidygraph, vcdExtra |
| Reverse enhances: | relations |
Linking:
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