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statgenMPP: QTL Mapping for Multi Parent Populations (original) (raw)

For Multi Parent Populations (MPP) Identity By Descend (IBD) probabilities are computed using Hidden Markov Models. These probabilities are then used in a mixed model approach for QTL Mapping as described in Li et al. (<doi:10.1007/s00122-021-03919-7>).

Version: 1.0.4
Depends: R (≥ 3.6), statgenGWAS (≥ 1.0.9)
Imports: data.table, foreach, ggplot2, gridExtra, LMMsolver (≥ 1.0.5), rlang, scales, spam, statgenIBD (≥ 1.0.8)
Suggests: rmarkdown, knitr, tinytest
Published: 2025-02-11
DOI: 10.32614/CRAN.package.statgenMPP
Author: Martin Boer ORCID iD [aut], Wenhao Li ORCID iD [aut], Bart-Jan van RossumORCID iD [aut, cre], Fred van Eeuwijk ORCID iD [ctb]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl>
BugReports: https://github.com/Biometris/statgenMPP/issues
License: GPL (≥ 3)
URL: https://biometris.github.io/statgenMPP/index.html,https://github.com/Biometris/statgenMPP/
NeedsCompilation: no
Citation: statgenMPP citation info
Materials: README, NEWS
In views: Agriculture
CRAN checks: statgenMPP results

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