tidysq: Tidy Processing and Analysis of Biological Sequences (original) (raw)

A tidy approach to analysis of biological sequences. All processing and data-storage functions are heavily optimized to allow the fastest and most efficient data storage.

Version:

1.2.1

Depends:

R (≥ 3.0.0)

Imports:

checkmate (≥ 1.9.0), cli (≥ 2.0.0), crayon (≥ 1.3.4), dplyr (≥ 1.0.2), pillar (≥ 1.4.2), Rcpp (≥ 1.0.1), tibble (≥ 2.1.3), vctrs (≥ 0.3.0)

LinkingTo:

Rcpp, testthat

Suggests:

ape (≥ 5.3), bioseq (≥ 0.1.2), Biostrings (≥ 2.52.0), covr, knitr, lifecycle, purrr, seqinr (≥ 3.4-5), spelling, rmarkdown, testthat (≥ 3.0.0), withr (≥ 2.2.0), rlang, mockr

Published:

2024-10-06

DOI:

10.32614/CRAN.package.tidysq

Author:

Dominik Rafacz ORCID iD [cre, aut], Michal BurdukiewiczORCID iD [aut], Laura Bakala [aut], Leon Eyrich JessenORCID iD [ctb], Stefan Roediger ORCID iD [ctb], Jadwiga Slowik ORCID iD [ctb], Weronika Puchala ORCID iD [ctb], Katarzyna Sidorczuk [ctb], Filip Pietluch [ctb], Jaroslaw ChilimoniukORCID iD [ctb]

Maintainer:

Dominik Rafacz

BugReports:

https://github.com/BioGenies/tidysq/issues

License:

GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]

URL:

https://github.com/BioGenies/tidysq

NeedsCompilation:

yes

SystemRequirements:

GNU make, C++17

Language:

en-US

Materials:

README NEWS

CRAN checks:

tidysq results [issues need fixing before 2024-10-25]