tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics (original) (raw)
Methods and feature set definitions for feature or gene set enrichment analysis in transcriptional and metabolic profiling data. Package includes tests for enrichment based on ranked lists of features, functions for visualisation and multivariate functional analysis. See Zyla et al (2019) <doi:10.1093/bioinformatics/btz447>.
| Version: | 0.50.13 |
|---|---|
| Depends: | R (≥ 2.10) |
| Imports: | beeswarm, tagcloud, XML, methods, plotwidgets, RColorBrewer, gplots, tibble, pheatmap, ggplot2, tidyr, purrr, rlang, tidyselect, ggrepel |
| Suggests: | testthat, knitr, rmarkdown, dplyr, pander, cowplot |
| Published: | 2023-03-31 |
| DOI: | 10.32614/CRAN.package.tmod |
| Author: | January Weiner  [aut, cre] |
| Maintainer: | January Weiner <january.weiner at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)] |
| URL: | https://tmod.online, https://github.com/january3/tmod/,https://january3.github.io/tmod/ |
| NeedsCompilation: | no |
| Citation: | tmod citation info |
| Materials: | README, |
| In views: | Omics |
| CRAN checks: | tmod results |
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