Stack, Concatenate, and Block — Dask documentation (original) (raw)

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Contents

• Stack
• Concatenate
• Block

Contents

• Stack
• Concatenate
• Block

Stack, Concatenate, and Block¶

Often we have many arrays stored on disk that we want to stack together and think of as one large array. This is common with geospatial data in which we might have many HDF5/NetCDF files on disk, one for every day, but we want to do operations that span multiple days.

To solve this problem, we use the functions da.stack, da.concatenate, and da.block.

Stack¶

We stack many existing Dask arrays into a new array, creating a new dimension as we go.

import dask.array as da

arr0 = da.from_array(np.zeros((3, 4)), chunks=(1, 2)) arr1 = da.from_array(np.ones((3, 4)), chunks=(1, 2))

data = [arr0, arr1]

x = da.stack(data, axis=0) x.shape (2, 3, 4)

da.stack(data, axis=1).shape (3, 2, 4)

da.stack(data, axis=-1).shape (3, 4, 2)

This creates a new dimension with length equal to the number of slices

Concatenate¶

We concatenate existing arrays into a new array, extending them along an existing dimension

import dask.array as da import numpy as np

arr0 = da.from_array(np.zeros((3, 4)), chunks=(1, 2)) arr1 = da.from_array(np.ones((3, 4)), chunks=(1, 2))

data = [arr0, arr1]

x = da.concatenate(data, axis=0) x.shape (6, 4)

da.concatenate(data, axis=1).shape (3, 8)

Block¶

We can handle a larger variety of cases with da.block as it allows concatenation to be applied over multiple dimensions at once. This is useful if your chunks tile a space, for example if small squares tile a larger 2-D plane.

import dask.array as da import numpy as np

arr0 = da.from_array(np.zeros((3, 4)), chunks=(1, 2)) arr1 = da.from_array(np.ones((3, 4)), chunks=(1, 2))

data = [ ... [arr0, arr1], ... [arr1, arr0] ... ]

x = da.block(data) x.shape (6, 8)