Create Example function — create_differential_topology (original) (raw)

This creates a simulated reduced dimension dataset

create_differential_topology( n_cells = 200, noise = 0.15, shift = 10, unbalance_level = 0.9, speed = 1 )

Arguments

n_cells	The number of cells in the dataset.
noise	Amount of noise. Between 0 and 1.
shift	How much should the top lineage shift in condition B.
unbalance_level	How much should the bottom lineage be unbalanced toward condition A.
speed	How fast the cells from condition B should differentiate

A list with two components

sd: An n_cells by 4 dataframe that contains the reduced dimensions coordinates, lineage assignment (1 or 2) and condition assignment (A or B) for each cell.
mst: a data.frame that contains the skeleton of the trajectories

sd <- create_differential_topology()