Number of lineages — nLineages (original) (raw)
Return the number of lineages for a slingshot object
nLineages(sds, ...)
S4 method for SingleCellExperiment
nLineages(sds)
S4 method for SlingshotDataSet
nLineages(sds)
S4 method for PseudotimeOrdering
nLineages(sds)
Arguments
| sds | A slingshot object already run on the full dataset. Can be either aSlingshotDataSet or aSingleCellExperiment object. |
|---|---|
| ... | parameters including: |
Value
The number of lineages in the slingshot object
Examples
data(list = 'slingshotExample', package = "slingshot") if (!"cl" %in% ls()) { rd <- slingshotExample$rd cl <- slingshotExample$cl } sds <- slingshot::slingshot(rd, cl) nLineages(sds)
#> [1] 2