MassIVE-KB Peptide Spectral Libraries (original) (raw)
MassIVE KB v2: MassIVE Knowledge Base spectral library v2 - full releases
Download | Library Name | Description | Precursors | Peptides | Proteins |
---|---|---|---|---|---|
MGF |sptxt | KB 2.0.15, full | Human peptide spectral library constructed from 1.25 billion spectra from in vivo proteomics and synthetic peptide experiments, including spectra from multiple data types. Use to obtain the best evidence of peptide fragmentation for all peptide variants across all included datasets. | 5,948,126 | 2,492,495 | 24,677 |
MGF |sptxt | KB 2.0.15, in vivo | Human peptide spectral library constructed from 1.2 billion spectra from in vivo proteomics experiments, including spectra from multiple data types. Use to obtain the best evidence of protein existence across all included datasets. | 4,843,818 | 1,958,922 | 19,436 |
MGF |sptxt | KB 2.0.15, in vivo, HCD only | Human peptide spectral library constructed from 1 billion spectra from in vivo proteomics experiments, including only high resolution spectra from label-free HCD experiments. Use for searching newly-acquired HCD data against the best representative HCD spectra for peptides detected across all included datasets. | 2,140,865 | 1,055,165 | 17,421 |
MGF |sptxt | KB 2.0.15, synthetic | Human peptide spectral library constructed from 350k HCD spectra from synthetic peptides generated in the ProteomeTools and Bioplex (bait proteins) experiments. Use for searching newly-acquired HCD data against the best representative HCD spectra for synthetic peptides. | 1,662,275 | 889,204 | 19,970 |
MassIVE KB v2: MassIVE Knowledge Base spectral library v2 - subset releases
Download | Library Name | Description | Precursors | Peptides | Proteins |
---|---|---|---|---|---|
MGF |sptxt | KB 2.0.15, in vivo, Low-res only | MassIVE-KB v2, low resolution MS/MS spectra only | 512,186 | 290,698 | 11,071 |
MGF |sptxt | KB 2.0.15, in vivo, TMT only | MassIVE-KB v2, MS/MS spectra of TMT-labeled peptides | 777,307 | 462,395 | 13,482 |
MGF |sptxt | KB 2.0.15, in vivo, Modified only | MassIVE-KB v2, MS/MS spectra of peptides from modification-enrichment experiments | 200,345 | 111,415 | 7,211 |
MGF |sptxt | KB 2.0.15, in vivo, Multiple enzymes only | MassIVE-KB v2, MS/MS spectra of peptides from proteomics experiments digested with various different enzymes | 1,110,005 | 720,167 | 11,376 |
MassIVE KB v1: MassIVE Knowledge Base spectral library v1 - full releases
Download | Library Name | Description | Precursors | Peptides | Proteins |
---|---|---|---|---|---|
MGF |sptxt | Human HCD Spectral Library | Human HCD spectral library derived from over 30TB of human MS/MS proteomics data and including ProteomeTools synthetic peptides | 2,154,269 | 1,114,503 | 19,611 |
MGF |sptxt | ProteomeTools HCD Spectral Library | HCD spectral library from ProteomeTools human-derived synthetic peptides (Zolg et al, 2017,http://www.proteometools.org, PMID: 28135259) | 264,836 | 204,625 | 19,552 |
Citation
Wang, Mingxun, Jian Wang, Jeremy Carver, Benjamin S. Pullman, Seong Won Cha, and Nuno Bandeira.
Cell systems (2018).
Copyright © 2024. Last modified: 2024-05-23. Version 1.3.16-MassIVE.