| gtex_bulk_matrix |
Matrix of average gene expression from GTEx recount bulk RNA seq. |
| ref_MCA |
Matrix of average gene expression for single-cell RNA-seq. |
| ref_cortex_dev |
Matrix of average gene detection on cortex development cell types |
| ref_hema_microarray |
Matrix of average gene detection by microarray on sorted immune cell populations |
| ref_immgen |
Matrix of average gene expression from immgen data |
| ref_moca_main |
Matrix of average gene expression per cluster from single-cell sci-RNA-seq3 from Mouse Organogenesis Cell Atlas. |
| ref_mouse.rnaseq |
Matrix of average gene expression from general mouse cell type data |
| ref_pan_indrop |
Matrix of average gene expression per cluster from single-cell RNA-seq pancreas data using indrop method. |
| ref_pan_smartseq2 |
Matrix of average gene expression per cluster from single-cell RNA-seq pancreas data using smartseq2 method. |
| ref_tabula_muris_drop |
Matrix of average gene expression per cluster from single-cell RNA-seq from Tabula Muris (10x genomics). |
| ref_tabula_muris_facs |
Matrix of average gene expression per cluster from single-cell RNA-seq from Tabula Muris (SMART-Seq2). |
| Data sets ported from Seurat |
|
| s_small |
Small clustered Seurat2 object |
| s_small3 |
Small clustered Seurat3 object |
| Data sets from 10x Genomics |
|
| pbmc5_markers |
Marker genes identified by Seurat from single-cell RNA-seq PBMCs from 5'end kit. |
| pbmc5_matrix |
Matrix of single-cell RNA-seq PBMCs from 5'end kit. |
| pbmc5_meta |
Meta-data for single-cell RNA-seq PBMCs from 5'end kit. |
| pbmc_avg |
Matrix of average gene expression per cluster from single-cell RNA-seq PBMCs. |
| pbmc_markers |
Marker genes identified by Seurat from single-cell RNA-seq PBMCs. |
| pbmc_markers_M3Drop |
Marker genes identified by M3Drop from single-cell RNA-seq PBMCs. |
| pbmc_matrix |
Matrix of single-cell RNA-seq PBMCs. |
| pbmc_meta |
Meta-data for single-cell RNA-seq PBMCs. |
| pbmc_vargenes |
variable genes identified by Seurat from single-cell RNA-seq PBMCs. |
| Data sets from the Mouse Cell Atlas |
|
| MCA_lung_mat |
Matrix of single-cell RNA-seq cells of the lung. |
| MCA_lung_meta |
Meta-data for single-cell RNA-seq of the lung. |
| Data sets from the Hemberg lab |
|
| pan_indrop_markers |
Marker genes identified by Seurat from single-cell RNA-seq pancreas data using indrop method. |
| pan_indrop_matrix |
Matrix of single-cell RNA-seq pancreas data using indrop method. |
| pan_indrop_meta |
Meta-data for single-cell RNA-seq pancreas data using indrop method. |
| pan_indrop_vargenes |
variable genes identified by Seurat from single-cell RNA-seq pancreas data using indrop method. |
| pan_smartseq2_matrix |
Matrix of single-cell RNA-seq pancreas data using smartseq2 method. |
| pan_smartseq2_meta |
Meta-data for single-cell RNA-seq pancreas data using smartseq2 method. |
| pan_smartseq2_vargenes |
variable genes identified by Seurat from single-cell RNA-seq pancreas data using smartseq2 method. |
| Miscellaneous data sets |
|
| gtex_bulk_matrix |
Matrix of average gene expression from GTEx recount bulk RNA seq. |
| yan_ref |
Matrix of average gene expression from `yan` human embryo data |
| downrefs |
table of references stored in clustifyrdata |