EBSeq (original) (raw)

This is the released version of EBSeq; for the devel version, seeEBSeq.

An R package for gene and isoform differential expression analysis of RNA-seq data

Bioconductor version: Release (3.20)

Differential Expression analysis at both gene and isoform level using RNA-seq data

Author: Xiuyu Ma [cre, aut], Ning Leng [aut], Christina Kendziorski [ctb], Michael A. Newton [ctb]

Maintainer: Xiuyu Ma

Citation (from within R, enter citation("EBSeq")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSeq")

Details

biocViews DifferentialExpression, ImmunoOncology, MultipleComparison, RNASeq, Sequencing, Software, StatisticalMethod
Version 2.4.0
In Bioconductor since BioC 2.13 (R-3.0) (11 years)
License Artistic-2.0
Depends blockmodeling, gplots, testthat, R (>= 3.0.0)
Imports Rcpp (>= 0.12.11), RcppEigen (>= 0.3.2.9.0)
System Requirements c++11
URL

See More

Suggests
Linking To Rcpp, RcppEigen, BH
Enhances
Depends On Me Oscope
Imports Me BatchQC, broadSeq, DEsubs, scDD
Suggests Me compcodeR
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EBSeq_2.4.0.tar.gz
Windows Binary (x86_64) EBSeq_2.4.0.zip (64-bit only)
macOS Binary (x86_64) EBSeq_2.4.0.tgz
macOS Binary (arm64) EBSeq_2.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EBSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EBSeq
Bioc Package Browser https://code.bioconductor.org/browse/EBSeq/
Package Short Url https://bioconductor.org/packages/EBSeq/
Package Downloads Report Download Stats