aCGH (original) (raw)

This is the released version of aCGH; for the devel version, seeaCGH.

Classes and functions for Array Comparative Genomic Hybridization data

Bioconductor version: Release (3.20)

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand , Peter Dimitrov

Maintainer: Peter Dimitrov

Citation (from within R, enter citation("aCGH")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("aCGH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("aCGH")

Details

biocViews CopyNumberVariation, DataImport, Genetics, Software
Version 1.84.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19.5 years)
License GPL-2
Depends R (>= 2.10), cluster, survival, multtest
Imports Biobase, grDevices, graphics, methods, stats, splines, utils
System Requirements
URL

See More

Suggests
Linking To
Enhances
Depends On Me CRImage
Imports Me ADaCGH2
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package aCGH_1.84.0.tar.gz
Windows Binary (x86_64) aCGH_1.84.0.zip (64-bit only)
macOS Binary (x86_64) aCGH_1.84.0.tgz
macOS Binary (arm64) aCGH_1.84.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/aCGH
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/aCGH
Bioc Package Browser https://code.bioconductor.org/browse/aCGH/
Package Short Url https://bioconductor.org/packages/aCGH/
Package Downloads Report Download Stats