affxparser (original) (raw)

This is the released version of affxparser; for the devel version, seeaffxparser.

Affymetrix File Parsing SDK

Bioconductor version: Release (3.20)

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]

Maintainer: Kasper Daniel Hansen

Citation (from within R, enter citation("affxparser")):

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affxparser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Details

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Package Archives

Follow Installation instructions to use this package in your R session.