ddPCRclust (original) (raw)

This is the released version of ddPCRclust; for the devel version, seeddPCRclust.

Clustering algorithm for ddPCR data

Bioconductor version: Release (3.21)

The ddPCRclust algorithm can automatically quantify the CPDs of non-orthogonal ddPCR reactions with up to four targets. In order to determine the correct droplet count for each target, it is crucial to both identify all clusters and label them correctly based on their position. For more information on what data can be analyzed and how a template needs to be formatted, please check the vignette.

Author: Benedikt G. Brink [aut, cre], Justin Meskas [ctb], Ryan R. Brinkman [ctb]

Maintainer: Benedikt G. Brink

Citation (from within R, enter citation("ddPCRclust")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ddPCRclust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ddPCRclust")

Details

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Follow Installation instructions to use this package in your R session.