pathRender (original) (raw)

This is the released version of pathRender; for the devel version, seepathRender.

Render molecular pathways

Bioconductor version: Release (3.21)

build graphs from pathway databases, render them by Rgraphviz.

Author: Li Long

Maintainer: Vince Carey

Citation (from within R, enter citation("pathRender")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pathRender")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathRender")
pathRender overview PDF R Script
pathway graphs colored by expression map PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews GraphAndNetwork, Pathways, Software, Visualization
Version 1.76.0
In Bioconductor since BioC 1.8 (R-2.3) (19 years)
License LGPL
Depends graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods, stats4
Imports
System Requirements
URL http://www.bioconductor.org

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pathRender_1.76.0.tar.gz
Windows Binary (x86_64) pathRender_1.76.0.zip
macOS Binary (x86_64) pathRender_1.76.0.tgz
macOS Binary (arm64) pathRender_1.76.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pathRender
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pathRender
Bioc Package Browser https://code.bioconductor.org/browse/pathRender/
Package Short Url https://bioconductor.org/packages/pathRender/
Package Downloads Report Download Stats