pathlinkR (original) (raw)

This is the released version of pathlinkR; for the devel version, seepathlinkR.

Analyze and interpret RNA-Seq results

Bioconductor version: Release (3.20)

pathlinkR is an R package designed to facilitate analysis of RNA-Seq results. Specifically, our aim with pathlinkR was to provide a number of tools which take a list of DE genes and perform different analyses on them, aiding with the interpretation of results. Functions are included to perform pathway enrichment, with muliplte databases supported, and tools for visualizing these results. Genes can also be used to create and plot protein-protein interaction networks, all from inside of R.

Author: Travis Blimkie [cre] , Andy An [aut]

Maintainer: Travis Blimkie <travis.m.blimkie at gmail.com>

Citation (from within R, enter citation("pathlinkR")):

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pathlinkR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathlinkR")

Details

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Package Archives

Follow Installation instructions to use this package in your R session.