rnaseqcomp (original) (raw)

This is the released version of rnaseqcomp; for the devel version, seernaseqcomp.

Benchmarks for RNA-seq Quantification Pipelines

Bioconductor version: Release (3.21)

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

Author: Mingxiang Teng and Rafael A. Irizarry

Maintainer: Mingxiang Teng

Citation (from within R, enter citation("rnaseqcomp")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rnaseqcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaseqcomp")

Details

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Package Archives

Follow Installation instructions to use this package in your R session.