ModRNAString alphabet (original) (raw)

1,2’-O-dimethyladenosine

m1Am

01A

A

œ

1,2’-O-dimethylguanosine

m1Gm

01G

G

ε

1,2’-O-dimethylinosine

m1Im

019A

A

ξ

1-methyl-3-(3-amino-3-carboxypropyl)pseudouridine

m1acp3Y

1309U

U

α

1-methyladenosine

m1A

1A

A

"

1-methylguanosine

m1G

1G

G

K

1-methylinosine

m1I

19A

A

O

1-methylpseudouridine

m1Y

19U

U

]

2,8-dimethyladenosine

m2,8A

28A

A

±

2-geranylthiouridine

ges2U

21U

U

Γ

2-lysidine

k2C

21C

C

}

2-methyladenosine

m2A

2A

A

/

2-methylthiomethylenethio-N6-isopentenyl-adenosine

msms2i6A

2361A

A

£

2-methylthio-cyclic-N6-threonylcarbamoyladenosine

ms2ct6A

2164A

A

ÿ

2-methylthio-N6-(cis-hydroxyisopentenyl)-adenosine

ms2io6A

2160A

A

≠

2-methylthio-N6-hydroxynorvalylcarbamoyladenosine

ms2hn6A

2163A

A

≈

2-methylthio-N6-isopentenyladenosine

ms2i6A

2161A

A

*

2-methylthio-N6-methyladenosine

ms2m6A

621A

A

∞

2-methylthio-N6-threonylcarbamoyladenosine

ms2t6A

2162A

A

[

2-selenouridine

se2U

20U

U

ω

2-thio-2’-O-methyluridine

s2Um

02U

U

∏

2-thiocytidine

s2C

2C

C

%

2-thiouridine

s2U

2U

U

2

2’-O-methyladenosine

Am

0A

A

:

2’-O-methylcytidine

Cm

0C

C

B

2’-O-methylguanosine

Gm

0G

G

2’-O-methylinosine

Im

09A

A

≤

2’-O-methylpseudouridine

Ym

09U

U

Z

2’-O-methyluridine

Um

0U

U

J

2’-O-methyluridine 5-oxyacetic acid methyl ester

mcmo5Um

0503U

U

Ä

2’-O-ribosyladenosine (phosphate)

Ar(p)

00A

A

^

2’-O-ribosylguanosine (phosphate)

Gr(p)

00G

G

ℑ

3,2’-O-dimethyluridine

m3Um

03U

U

σ

3-(3-amino-3-carboxypropyl)-5,6-dihydrouridine

acp3D

308U

U

Ð

3-(3-amino-3-carboxypropyl)pseudouridine

acp3Y

309U

U

Þ

3-(3-amino-3-carboxypropyl)uridine

acp3U

30U

U

X

3-methylcytidine

m3C

3C

C

’

3-methylpseudouridine

m3Y

39U

U

κ

3-methyluridine

m3U

3U

U

δ

4-demethylwyosine

imG-14

4G

G

†

4-thiouridine

s4U

74U

U

4

5,2’-O-dimethylcytidine

m5Cm

05C

C

τ

5,2’-O-dimethyluridine

m5Um

05U

U

¤

5-(carboxyhydroxymethyl)-2’-O-methyluridine methyl ester

mchm5Um

0522U

U

b

5-(carboxyhydroxymethyl)uridine methyl ester

mchm5U

522U

U

,

5-(isopentenylaminomethyl)-2-thiouridine

inm5s2U

2583U

U

½

5-(isopentenylaminomethyl)-2’-O-methyluridine

inm5Um

0583U

U

¼

5-(isopentenylaminomethyl)uridine

inm5U

583U

U

¾

5-aminomethyl-2-geranylthiouridine

nm5ges2U

21510U

U

Δ

5-aminomethyl-2-selenouridine

nm5se2U

20510U

U

π

5-aminomethyl-2-thiouridine

nm5s2U

2510U

U

∫

5-aminomethyluridine

nm5U

510U

U

∪

5-carbamoylhydroxymethyluridine

nchm5U

531U

U

r

5-carbamoylmethyl-2-thiouridine

ncm5s2U

253U

U

l

5-carbamoylmethyl-2’-O-methyluridine

ncm5Um

053U

U

~

5-carbamoylmethyluridine

ncm5U

53U

U

&

5-carboxyhydroxymethyluridine

chm5U

520U

U

≥

5-carboxymethyl-2-thiouridine

cm5s2U

2540U

U

℘

5-carboxymethylaminomethyl-2-geranylthiouridine

cmnm5ges2U

2151U

U

f

5-carboxymethylaminomethyl-2-selenouridine

cmnm5se2U

2051U

U

⊥

5-carboxymethylaminomethyl-2-thiouridine

cmnm5s2U

251U

U

$

5-carboxymethylaminomethyl-2’-O-methyluridine

cmnm5Um

051U

U

)

5-carboxymethylaminomethyluridine

cmnm5U

51U

U

!

5-carboxymethyluridine

cm5U

52U

U

◊

5-cyanomethyluridine

cnm5U

55U

U

Ѷ

5-formyl-2’-O-methylcytidine

f5Cm

071C

C

°

5-formylcytidine

f5C

71C

C

×

5-hydroxycytidine

ho5C

50C

C

Ç

5-hydroxymethylcytidine

hm5C

51C

C

∅

5-hydroxyuridine

ho5U

50U

U

∝

5-methoxycarbonylmethyl-2-thiouridine

mcm5s2U

2521U

U

3

5-methoxycarbonylmethyl-2’-O-methyluridine

mcm5Um

0521U

U

∩

5-methoxycarbonylmethyluridine

mcm5U

521U

U

1

5-methoxyuridine

mo5U

501U

U

5

5-methyl-2-thiouridine

m5s2U

25U

U

F

5-methylaminomethyl-2-geranylthiouridine

mnm5ges2U

21511U

U

h

5-methylaminomethyl-2-selenouridine

mnm5se2U

20511U

U

≅

5-methylaminomethyl-2-thiouridine

mnm5s2U

2511U

U

S

5-methylaminomethyluridine

mnm5U

511U

U

{

5-methylcytidine

m5C

5C

C

?

5-methyldihydrouridine

m5D

58U

U

ρ

5-methyluridine

m5U

5U

U

T

5-taurinomethyl-2-thiouridine

tm5s2U

254U

U

∃

5-taurinomethyluridine

tm5U

54U

U

Ê

7-aminocarboxypropyl-demethylwyosine

yW-86

47G

G

¥

7-aminocarboxypropylwyosine

yW-72

347G

G

Ω

7-aminocarboxypropylwyosine methyl ester

yW-58

348G

G

⇑

7-aminomethyl-7-deazaguanosine

preQ1tRNA

101G

G

∉

7-cyano-7-deazaguanosine

preQ0tRNA

100G

G

φ

7-methylguanosine

m7G

7G

G

7

8-methyladenosine

m8A

8A

A

â

N2,2’-O-dimethylguanosine

m2Gm

02G

G

γ

N2,7,2’-O-trimethylguanosine

m2,7Gm

027G

G

æ

N2,7-dimethylguanosine

m2,7G

27G

G

∨

N2,N2,2’-O-trimethylguanosine

m2,2Gm

022G

G

|

N2,N2,7-trimethylguanosine

m2,2,7G

227G

G

∠

N2,N2-dimethylguanosine

m2,2G

22G

G

R

N2-methylguanosine

m2G

2G

G

L

N4,2’-O-dimethylcytidine

m4Cm

04C

C

λ

N4,N4,2’-O-trimethylcytidine

m4,4Cm

044C

C

β

N4,N4-dimethylcytidine

m4,4C

44C

C

μ

N4-acetyl-2’-O-methylcytidine

ac4Cm

042C

C

ℵ

N4-acetylcytidine

ac4C

42C

C

M

N4-methylcytidine

m4C

4C

C

ν

N6,2’-O-dimethyladenosine

m6Am

06A

A

χ

N6,N6,2’-O-trimethyladenosine

m6,6Am

066A

A

η

N6,N6-dimethyladenosine

m6,6A

66A

A

ζ

N6-(cis-hydroxyisopentenyl)adenosine

io6A

60A

A

`

N6-acetyladenosine

ac6A

64A

A

⇓

N6-formyladenosine

f6A

67A

A

Ϩ

N6-glycinylcarbamoyladenosine

g6A

65A

A

≡

N6-hydroxymethyladenosine

hm6A

68A

A

Ϫ

N6-hydroxynorvalylcarbamoyladenosine

hn6A

63A

A

√

N6-isopentenyladenosine

i6A

61A

A

Θ

N6-methyl-N6-threonylcarbamoyladenosine

m6t6A

662A

A

E

N6-methyladenosine

m6A

6A

A

=

N6-threonylcarbamoyladenosine

t6A

62A

A

6

agmatidine

C+

20C

C

¿

archaeosine

G+

103G

G

(

cyclic N6-threonylcarbamoyladenosine

ct6A

69A

A

e

dihydrouridine

D

8U

U

D

epoxyqueuosine

oQtRNA

102G

G

ς

galactosyl-queuosine

galQtRNA

104G

G

9

glutamyl-queuosine

gluQtRNA

105G

G

⊄

hydroxy-N6-threonylcarbamoyladenosine

ht6A

2165A

A

«

hydroxywybutosine

OHyW

34830G

G

⊆

inosine

I

9A

A

I

isowyosine

imG2

42G

G

⊇

mannosyl-queuosine

manQtRNA

106G

G

8

methylated undermodified hydroxywybutosine

OHyWy

3480G

G

y

methylwyosine

mimG

342G

G

∑

peroxywybutosine

o2yW

34832G

G

W

pseudouridine

Y

9U

U

P

queuosine

QtRNA

10G

G

Q

undermodified hydroxywybutosine

OHyWx

3470G

G

š

unknown methylated base

Xm

0X

N

Î

unknown modification

xX

X

N

÷

unknown modified adenosine

xA

?A

A

H

unknown modified cytidine

xC

?C

C

<

unknown modified guanosine

xG

?G

G

;

unknown modified uridine

xU

?U

U

Ü

uridine 5-oxyacetic acid

cmo5U

502U

U

V

uridine 5-oxyacetic acid methyl ester

mcmo5U

503U

U

υ

wybutosine

yW

3483G

G

Y

wyosine

imG

34G

G

€