pathway analysis (mummichog) (original) (raw)
Contents
statTarget result for pathway analysis using mummichog approach.
Pathways analysis by using MS peaks with accurate mass
- to get the p.value from the file in /statTarget/statAnalysis/Univariate/Pvalues
- to get the fold.change from the file in /statTarget/statAnalysis/Univariate/Fold_Changes
- to get the m.z from the .tsv file from the xcms output.
- to use the EXCEL for generation the “.txt” format with
column named m.z, p.value and t.score (fold.change value)
submit the table to MS to pathway analysis panel in metaboanalyst web: https://www.metaboanalyst.ca/MetaboAnalyst/faces/upload/PeakUploadView.xhtml