GenomicDistributionsData (original) (raw)

This is the released version of GenomicDistributionsData; for the devel version, seeGenomicDistributionsData.

Reference data for GenomicDistributions package

Bioconductor version: Release (3.20)

This package provides ready to use reference data for GenomicDistributions package. Raw data was obtained from ensembldb and processed with helper functions. Data files are available for the following genome assemblies: hg19, hg38, mm9 and mm10.

Author: Michal Stolarczyk [aut], Kristyna Kupkova [aut, cre], Jose Verdezoto [aut], John Lawson [ctb], Jason Smith [ctb], Nathan C. Sheffield [ctb]

Maintainer: Kristyna Kupkova

Citation (from within R, enter citation("GenomicDistributionsData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicDistributionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicDistributionsData")
1. Getting started with GenomicDistributionsData HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, Genome
Version 1.14.0
License BSD_2_clause + file LICENSE
Depends R (>= 4.1)
Imports ExperimentHub(>= 1.14.0), AnnotationHub, AnnotationFilter, data.table, utils, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, ensembldb
System Requirements
URL
Bug Reports http://github.com/databio/GenomicDistributionsData

See More

Suggests knitr, BiocStyle, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me GenomicDistributions
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicDistributionsData_1.14.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/GenomicDistributionsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenomicDistributionsData
Package Short Url https://bioconductor.org/packages/GenomicDistributionsData/
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