Package Recipe 'metabuli' — Bioconda documentation (original) (raw)
recipe metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
Homepage:
https://github.com/steineggerlab/Metabuli
License:
GPLv3
Recipe:
Links:
doi: 10.1038/s41592-024-02273-y, biotools: metabuli
package metabuli¶
versions:
1.0.8-0
,1.0.5-2
,1.0.5-1
,1.0.5-0
,1.0.3-1
,1.0.3-0
,1.0.2-0
,1.0.1-0
,1.0.0-0
depends _openmp_mutex:
>=4.5
depends aria2:
depends bzip2:
>=1.0.8,<2.0a0
depends gawk:
depends libgcc:
>=12
depends libstdcxx:
>=12
depends libzlib:
>=1.2.13,<2.0a0
depends perl:
>=5.32.1,<5.33.0a0 *_perl5
depends wget:
depends zlib:
requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install metabuli
and update with::
mamba update metabuli
To create a new environment, run:
mamba create --name myenvname metabuli
with myenvname
being a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/metabuli:
(see metabuli/tags
_ for valid values for <tag>
)