ACNE: Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization (original) (raw)
A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).
| Version: | 0.9.1 |
|---|---|
| Depends: | R (≥ 3.0.0), aroma.affymetrix (≥ 2.14.0) |
| Imports: | MASS, R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.23.0), R.utils (≥ 2.1.0), matrixStats (≥ 0.50.0), R.filesets (≥ 2.9.0), aroma.core (≥ 2.14.0) |
| Suggests: | DNAcopy |
| Published: | 2024-02-17 |
| DOI: | 10.32614/CRAN.package.ACNE |
| Author: | Maria Ortiz [aut], Henrik Bengtsson [aut, cre, cph], Angel Rubio [aut] |
| Maintainer: | Henrik Bengtsson |
| BugReports: | https://github.com/HenrikBengtsson/ACNE/issues |
| License: | LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] |
| URL: | https://github.com/HenrikBengtsson/ACNE |
| NeedsCompilation: | no |
| Citation: | ACNE citation info |
| Materials: | README NEWS |
| In views: | Omics |
| CRAN checks: | ACNE results |
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